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I've been running a pruned node on a very low-end server ( <2GB of RAM), and monerod keeps spitting out lines like that every couple blocks.

May be relevant, opening a wallet with the RPC throws this warning: WARNING: You may not have a high enough lockable memory limit, see ulimit -l as well.

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From moneromoo on Github:

That's from nodes that don't understand pruning are asking you for data that you pruned. It's OK.

For the lockable memory issue, you can increase the amount of lockable memory using the command the message is giving you.

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